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    BLH3 BEL1-like homeodomain 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843877, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BLH3
    Official Full Name
    BEL1-like homeodomain 3
    Primary source
    TAIR:AT1G75410
    Locus tag
    AT1G75410
    See related
    Araport:AT1G75410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BEL1-like homeodomain 3; F1B16.6; F1B16_6
    Summary
    BEL1-like homeodomain 3 (BLH3)
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    Genomic context

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    See BLH3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (28299786..28302728, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene RING/U-box superfamily protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene BEL1-like homeodomain 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ovate family protein1 interaction with BLH3 regulates transition timing from vegetative to reproductive phase in Arabidopsis. Zhang L, et al. Biochem Biophys Res Commun, 2016 Feb 12. PMID 26809096
    2. Binding properties of the complex formed by the Arabidopsis TALE homeodomain proteins STM and BLH3 to DNA containing single and double target sites. Viola IL, et al. Biochimie, 2009 Aug. PMID 19442701
    3. Nuclear import of the transcription factor SHOOT MERISTEMLESS depends on heterodimerization with BLH proteins expressed in discrete sub-domains of the shoot apical meristem of Arabidopsis thaliana. Cole M, et al. Nucleic Acids Res, 2006. PMID 16513846, Free PMC Article
    4. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. Hackbusch J, et al. Proc Natl Acad Sci U S A, 2005 Mar 29. PMID 15781858, Free PMC Article
    5. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These results support our assumption that, by interacting with OFP1, BLH3 forms a functional protein complex that controls timing of progression from vegetative to reproductive phase.
      Title: Ovate family protein1 interaction with BLH3 regulates transition timing from vegetative to reproductive phase in Arabidopsis.
    2. the DNA-binding properties of the complex formed by the Arabidopsis TALE homeodomain (HD) proteins STM and BLH3
      Title: Binding properties of the complex formed by the Arabidopsis TALE homeodomain proteins STM and BLH3 to DNA containing single and double target sites.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084358.2
    NM_001334686.1
    NM_106195.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BEL1-like homeodomain 3
    NP_001077827.1
    • BEL1-like homeodomain 3 (BLH3); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 10 (TAIR:AT1G19700.3); Has 5228 Blast hits to 5212 proteins in 344 species: Archae - 0; Bacteria - 24; Metazoa - 2027; Fungi - 328; Plants - 2469; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
    NP_177674.1
    • BEL1-like homeodomain 3 (BLH3); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 10 (TAIR:AT1G19700.3); Has 5228 Blast hits to 5212 proteins in 344 species: Archae - 0; Bacteria - 24; Metazoa - 2027; Fungi - 328; Plants - 2469; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28299786..28302728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106195.5 → NP_177674.1  BEL1-like homeodomain 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177674.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WW07, Q8W4I2, Q9FWS9
      UniProtKB/TrEMBL
      A0A178W4C6, A0A5S9WUL5, A0A7G2E6E9
      Conserved Domains (2) summary
      pfam05920
      Location:364 → 403
      Homeobox_KN; Homeobox KN domain
      pfam07526
      Location:168 → 296
      POX; Associated with HOX

    2. NM_001334686.1 → NP_001320321.1  BEL1-like homeodomain 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMF2

    3. NM_001084358.2 → NP_001077827.1  BEL1-like homeodomain 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077827.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WW07, Q8W4I2, Q9FWS9
      UniProtKB/TrEMBL
      A0A178W4C6, A0A5S9WUL5, A0A7G2E6E9
      Conserved Domains (2) summary
      pfam05920
      Location:364 → 403
      Homeobox_KN; Homeobox KN domain
      pfam07526
      Location:168 → 296
      POX; Associated with HOX
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FWS9.1

    Gene LinkOut

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