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    JAZ6 jasmonate-zim-domain protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843577, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAZ6
    Official Full Name
    jasmonate-zim-domain protein 6
    Primary source
    TAIR:AT1G72450
    Locus tag
    AT1G72450
    See related
    Araport:AT1G72450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    jasmonate-zim-domain protein 6; T10D10.8; T10D10_8; TIFY DOMAIN PROTEIN 11B; TIFY11B
    Summary
    JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.
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    Genomic context

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    See JAZ6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (27273968..27276562, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene CCAAT-binding factor Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. Sheard LB, et al. Nature, 2010 Nov 18. PMID 20927106, Free PMC Article
    2. A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. Chung HS, et al. Plant Cell, 2009 Jan. PMID 19151223, Free PMC Article
    3. JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Thines B, et al. Nature, 2007 Aug 9. PMID 17637677
    4. The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Chini A, et al. Plant J, 2009 Jul. PMID 19309455
    5. The Arabidopsis F-box protein SKP1-INTERACTING PARTNER 31 modulates seed maturation and seed vigor by targeting JASMONATE ZIM DOMAIN proteins independently of jasmonic acid-isoleucine. Varshney V, et al. Plant Cell, 2023 Sep 27. PMID 37462265, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334533.1
    NM_105904.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    jasmonate-zim-domain protein 6
    NP_565043.1
    • jasmonate-zim-domain protein 6 (JAZ6); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 5 (TAIR:AT1G17380.1); Has 303 Blast hits to 298 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27273968..27276562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105904.4 → NP_565043.1  jasmonate-zim-domain protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565043.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9E3
      UniProtKB/TrEMBL
      A0A178W2J3, A0A5S9WTS0, A0A7G2E8D9
      Conserved Domains (2) summary
      smart00979
      Location:100 → 135
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:186 → 209
      CCT_2; Divergent CCT motif

    2. NM_001334533.1 → NP_001321693.1  jasmonate-zim-domain protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARP3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9E3.1

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