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    HCP-like superfamily protein with MYND-type zinc finger [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843055, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HCP-like superfamily protein with MYND-type zinc finger
    Primary source
    TAIR:AT1G67340
    Locus tag
    AT1G67340
    See related
    Araport:AT1G67340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N21.16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (25230239..25231943)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NADH-ubiquinone oxidoreductase Neighboring gene Rubber elongation factor protein (REF) Neighboring gene ncRNA Neighboring gene DNA-binding HORMA family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Gagne JM, et al. Proc Natl Acad Sci U S A, 2002 Aug 20. PMID 12169662, Free PMC Article
    2. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105402.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HCP-like superfamily protein with MYND-type zinc finger
    NP_564894.1
    • HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25230239..25231943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105402.3 → NP_564894.1  HCP-like superfamily protein with MYND-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564894.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FYF9
      UniProtKB/TrEMBL
      A0A654EM43
      Conserved Domains (3) summary
      COG0790
      Location:117 → 230
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:106 → 130
      SLR; SLR repeat [structural motif]
      pfam01753
      Location:305 → 346
      zf-MYND; MYND finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FYF9.1

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