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    zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843038, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
    Primary source
    TAIR:AT1G67180
    Locus tag
    AT1G67180
    See related
    Araport:AT1G67180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5A8.9; F5A8_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (25129647..25132283)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene F-box/kelch-repeat protein, putative (DUF295) Neighboring gene sarcolemmal membrane-associated protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A plant-specific module for homologous recombination repair. Wang X, et al. Proc Natl Acad Sci U S A, 2022 Apr 19. PMID 35412914, Free PMC Article
    2. Identification of Arabidopsis SUMO-interacting proteins that regulate chromatin activity and developmental transitions. Elrouby N, et al. Proc Natl Acad Sci U S A, 2013 Dec 3. PMID 24255109, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A plant-specific module for homologous recombination repair.
      Title: A plant-specific module for homologous recombination repair.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334282.1
    NM_105388.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SUMO binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homologous recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
    NP_176889.1
    • zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivators (TAIR:AT4G02110.1); Has 2482 Blast hits to 2442 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 1048; Fungi - 450; Plants - 465; Viruses - 61; Other Eukaryotes - 458 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25129647..25132283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334277.1 → NP_001322040.1  zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ENB1, A0A7G2E711, Q9ZW89
      Conserved Domains (3) summary
      cd00162
      Location:300 → 344
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam13639
      Location:299 → 345
      zf-RING_2; Ring finger domain
      cl00038
      Location:4 → 76
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

    2. NM_001334278.1 → NP_001322041.1  zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASR3
      Conserved Domains (1) summary
      pfam13639
      Location:217 → 263
      zf-RING_2; Ring finger domain

    3. NM_001334279.1 → NP_001322039.1  zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASR3
      Conserved Domains (1) summary
      pfam13639
      Location:217 → 263
      zf-RING_2; Ring finger domain

    4. NM_001334280.1 → NP_001322044.1  zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4T1, A0A1P8ASR2, A0A384KLV6, A0A7G2E711
      Conserved Domains (2) summary
      cd00162
      Location:218 → 262
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam13639
      Location:217 → 263
      zf-RING_2; Ring finger domain

    5. NM_001334281.1 → NP_001322042.1  zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASS5, A0A7G2E711
      Conserved Domains (3) summary
      PLN03208
      Location:278 → 389
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      pfam13639
      Location:299 → 345
      zf-RING_2; Ring finger domain
      cl00038
      Location:4 → 76
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

    6. NM_105388.3 → NP_176889.1  zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176889.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ENB1, A0A7G2E711, Q9ZW89
      Conserved Domains (3) summary
      cd00162
      Location:300 → 344
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam13639
      Location:299 → 345
      zf-RING_2; Ring finger domain
      cl00038
      Location:4 → 76
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

    7. NM_001334282.1 → NP_001322043.1  zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4T1, A0A1P8ASR2, A0A384KLV6, A0A7G2E711
      Conserved Domains (2) summary
      cd00162
      Location:218 → 262
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam13639
      Location:217 → 263
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version

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