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    cotton fiber (DUF761) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842420, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cotton fiber (DUF761)
    Primary source
    TAIR:AT1G61260
    Locus tag
    AT1G61260
    See related
    Araport:AT1G61260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11P17.2; F11P17_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (22593465..22595338, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene secretory carrier 3 Neighboring gene uncharacterized protein Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_104807.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cotton fiber (DUF761)
    NP_176321.2
    • Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1); Has 110 Blast hits to 108 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22593465..22595338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104807.3 → NP_176321.2  cotton fiber (DUF761) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176321.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI20, A0A5S9WN99, F4HTI9
      Conserved Domains (2) summary
      pfam05553
      Location:307 → 338
      DUF761; Cotton fibre expressed protein
      pfam14364
      Location:40 → 72
      DUF4408; Domain of unknown function (DUF4408)
    Nucleotide Protein
    Heading Accession and Version

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