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    ZCF61 E3 Ubiquitin ligase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842247, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ZCF61
    Official Full Name
    E3 Ubiquitin ligase family protein
    Primary source
    TAIR:AT1G59560
    Locus tag
    AT1G59560
    See related
    Araport:AT1G59560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DAL2; DIAP1-like protein 2; SP1-like 1; SPL1; T30E16.12; T30E16_12
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    Genomic context

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    See ZCF61 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (21881534..21883806)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene UBX domain-containing protein Neighboring gene tRNA-Ser Neighboring gene mitogen-activated protein kinase homolog 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The E3 ubiquitin ligase SP1-like 1 plays a positive role in peroxisome biogenesis in Arabidopsis. Pan R, et al. Plant J, 2018 Jun. PMID 29570879
    2. Arabidopsis DAL1 and DAL2, two RING finger proteins homologous to Drosophila DIAP1, are involved in regulation of programmed cell death. Basnayake BM, et al. Plant Cell Rep, 2011 Jan. PMID 20972793
    3. E3 ubiquitin ligase SP1 regulates peroxisome biogenesis in Arabidopsis. Pan R, et al. Proc Natl Acad Sci U S A, 2016 Nov 15. PMID 27799549, Free PMC Article
    4. Chloroplast biogenesis is regulated by direct action of the ubiquitin-proteasome system. Ling Q, et al. Science, 2012 Nov 2. PMID 23118188
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. plays a positive role in peroxisome biogenesis
      Title: The E3 ubiquitin ligase SP1-like 1 plays a positive role in peroxisome biogenesis in Arabidopsis.
    2. DAL1 and DAL2 may act as negative regulators of programmed cell death in Arabidopsis. [DAL2]
      Title: Arabidopsis DAL1 and DAL2, two RING finger proteins homologous to Drosophila DIAP1, are involved in regulation of programmed cell death.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333856.1
    NM_001333857.1
    NM_104650.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    E3 Ubiquitin ligase family protein
    NP_564745.1
    • ZCF61; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), E3 Ubiquitin ligase (InterPro:IPR022170); BEST Arabidopsis thaliana protein match is: E3 Ubiquitin ligase family protein (TAIR:AT1G63900.2); Has 2916 Blast hits to 2819 proteins in 249 species: Archae - 0; Bacteria - 10; Metazoa - 1665; Fungi - 49; Plants - 608; Viruses - 179; Other Eukaryotes - 405 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21881534..21883806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333855.1 → NP_001320817.1  E3 Ubiquitin ligase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANZ5, A0A5S9WQV6, A0A654EKZ4

    2. NM_104650.4 → NP_564745.1  E3 Ubiquitin ligase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564745.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94HV7, Q9LQ59, Q9SLU0
      UniProtKB/TrEMBL
      A0A5S9WQV6, A0A654EKZ4
      Conserved Domains (2) summary
      pfam12483
      Location:83 → 236
      GIDE; E3 Ubiquitin ligase
      pfam13920
      Location:289 → 332
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    3. NM_001333856.1 → NP_001320816.1  E3 Ubiquitin ligase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP06, A0A5S9WQV6, A0A654EKZ4

    4. NM_001333857.1 → NP_001320818.1  E3 Ubiquitin ligase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP03
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94HV7.1

    Gene LinkOut

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