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    coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842033, updated on 18-Sep-2024

    Summary

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    Official Full Name
    coiled-coil protein
    Primary source
    TAIR:AT1G55830
    Locus tag
    AT1G55830
    See related
    Araport:AT1G55830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20N2.20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20867559..20870338, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ferredoxin-fold anticodon-binding domain protein Neighboring gene BolA-like family protein Neighboring gene uridine kinase-like 3 Neighboring gene lysine-specific demethylase, putative (DUF1296) Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene cellulose synthase like E1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CCDC22 and CCDC93, two potential retriever-interacting proteins, are required for root and root hair growth in Arabidopsis. Lewis CD, et al. Front Plant Sci, 2022. PMID 36618652, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001333738.1
    NM_104460.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil protein
    NP_001185244.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530).
    NP_175979.2
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530); Has 10940 Blast hits to 7289 proteins in 653 species: Archae - 228; Bacteria - 791; Metazoa - 6174; Fungi - 805; Plants - 342; Viruses - 19; Other Eukaryotes - 2581 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20867559..20870338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198315.2 → NP_001185244.1  coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185244.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJZ6, F4I1X8, Q9LFZ1
      Conserved Domains (1) summary
      pfam05667
      Location:1 → 463
      DUF812; Protein of unknown function (DUF812)

    2. NM_104460.3 → NP_175979.2  coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175979.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I1X9
      Conserved Domains (1) summary
      pfam05667
      Location:149 → 382
      DUF812; Protein of unknown function (DUF812)

    3. NM_001333738.1 → NP_001322454.1  coiled-coil protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU40
    Nucleotide Protein
    Heading Accession and Version

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