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    spliceosome protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841879, updated on 18-Sep-2024

    Summary

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    Official Full Name
    spliceosome protein-like protein
    Primary source
    TAIR:AT1G54380
    Locus tag
    AT1G54380
    See related
    Araport:AT1G54380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.20; F20D21_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (20297805..20300979, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TBP-ASSOCIATED FACTOR 6B Neighboring gene sodium hydrogen exchanger 5 Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein Neighboring gene PHD finger protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms. Schlaen RG, et al. Proc Natl Acad Sci U S A, 2015 Jul 28. PMID 26170331, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104316.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within alternative mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within spliceosomal snRNP assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    spliceosome protein-like protein
    NP_564657.1
    • spliceosome protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42510.2); Has 222 Blast hits to 205 proteins in 80 species: Archae - 0; Bacteria - 6; Metazoa - 98; Fungi - 6; Plants - 54; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20297805..20300979 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104316.3 → NP_564657.1  spliceosome protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564657.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEI8, A0A5S9WLV7, A0A654EJT5, A0A7G2DXY1, Q9C5M7
      Conserved Domains (1) summary
      pfam04938
      Location:295 → 512
      SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)
    Nucleotide Protein
    Heading Accession and Version

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