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    RABG3d RAB GTPase homolog G3D [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841658, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RABG3d
    Official Full Name
    RAB GTPase homolog G3D
    Primary source
    TAIR:AT1G52280
    Locus tag
    AT1G52280
    See related
    Araport:AT1G52280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRABG3d; F19K6.10; F19K6_10; RAB GTPase homolog G3D
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    Genomic context

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    See RABG3d in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (19467815..19469586, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PDI-like 1-5 Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene Zinc-binding ribosomal protein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104107.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    RAB GTPase homolog G3D
    NP_175638.1
    • RAB GTPase homolog G3D (RABG3d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3C (TAIR:AT3G16100.1); Has 26220 Blast hits to 26194 proteins in 779 species: Archae - 32; Bacteria - 221; Metazoa - 13502; Fungi - 3923; Plants - 2848; Viruses - 20; Other Eukaryotes - 5674 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19467815..19469586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104107.3 → NP_175638.1  RAB GTPase homolog G3D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175638.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C820
      UniProtKB/TrEMBL
      A0A5S9WP77, A0A654EHS0
      Conserved Domains (1) summary
      cd01862
      Location:9 → 182
      Rab7; Rab GTPase family 7 (Rab7)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C820.1

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