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    extracellular ligand-gated ion channel protein (DUF3537) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841485, updated on 18-Sep-2024

    Summary

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    Official Full Name
    extracellular ligand-gated ion channel protein (DUF3537)
    Primary source
    TAIR:AT1G50630
    Locus tag
    AT1G50630
    See related
    Araport:AT1G50630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F12.5; F11F12_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (18751456..18753941, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene ncRNA Neighboring gene ethylene responsive element binding factor 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036090.2
    NM_103945.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    extracellular ligand-gated ion channel protein (DUF3537)
    NP_001031167.1
    • Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_564578.1
    • Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 144 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18751456..18753941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103945.2 → NP_564578.1  extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564578.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8T9, Q94A36, Q9LPT3
      Conserved Domains (1) summary
      pfam12056
      Location:35 → 436
      DUF3537; Protein of unknown function (DUF3537)

    2. NM_001036090.2 → NP_001031167.1  extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031167.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DFV1, F4I6J9
      Conserved Domains (1) summary
      pfam12056
      Location:35 → 408
      DUF3537; Protein of unknown function (DUF3537)
    Nucleotide Protein
    Heading Accession and Version

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