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    DNA/RNA polymerases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841422, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA/RNA polymerases superfamily protein
    Primary source
    TAIR:AT1G49980
    Locus tag
    AT1G49980
    See related
    Araport:AT1G49980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J10.13; F2J10_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (18507922..18513340)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Xanthine/uracil permease family protein Neighboring gene CLP protease proteolytic subunit 1 Neighboring gene photosystem I reaction center subunit N Neighboring gene F-box family protein Neighboring gene methyltransferase Neighboring gene ncRNA Neighboring gene tubulin alpha-2 chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The noncatalytic C-terminus of AtPOLK Y-family DNA polymerase affects synthesis fidelity, mismatch extension and translesion replication. García-Ortiz MV, et al. FEBS J, 2007 Jul. PMID 17550419
    2. Arabidopsis thaliana AtPOLK encodes a DinB-like DNA polymerase that extends mispaired primer termini and is highly expressed in a variety of tissues. García-Ortiz MV, et al. Plant J, 2004 Jul. PMID 15200644
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333411.1
    NM_001333412.1
    NM_001333413.1
    NM_001333414.1
    NM_103886.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-directed DNA polymerase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed DNA polymerase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA/RNA polymerases superfamily protein
    NP_175420.3
    • DNA/RNA polymerases superfamily protein; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 10430 Blast hits to 10220 proteins in 2419 species: Archae - 210; Bacteria - 6752; Metazoa - 626; Fungi - 433; Plants - 141; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18507922..18513340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333407.1 → NP_001320648.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC9, A0A1P8ANG9

    2. NM_001333408.1 → NP_001320649.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC9, A0A1P8ANG9

    3. NM_001333409.1 → NP_001320646.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC9

    4. NM_001333410.1 → NP_001320647.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC9

    5. NM_103886.4 → NP_175420.3  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175420.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8ANH5, Q56YN7, Q6JDV7, Q9LPM1
      UniProtKB/TrEMBL
      A0A178WEC9
      Conserved Domains (1) summary
      cd03586
      Location:106 → 438
      PolY_Pol_IV_kappa; DNA Polymerase IV/Kappa

    6. NM_001333411.1 → NP_001320645.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANG2

    7. NM_001333412.1 → NP_001320644.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC9

    8. NM_001333413.1 → NP_001320650.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC9

    9. NM_001333414.1 → NP_001320651.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANJ3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6JDV7.1

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