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    ECT7 evolutionarily conserved C-terminal region 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841229, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECT7
    Official Full Name
    evolutionarily conserved C-terminal region 7
    Primary source
    TAIR:AT1G48110
    Locus tag
    AT1G48110
    See related
    Araport:AT1G48110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    evolutionarily conserved C-terminal region 7; F21D18.17; F21D18_17
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    Genomic context

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    See ECT7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (17769938..17773518, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA Neighboring gene serine/threonine-protein phosphatase 7 long form-like protein Neighboring gene 1-cysteine peroxiredoxin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001123974.1
    NM_103707.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    evolutionarily conserved C-terminal region 7
    NP_001117446.1
    • evolutionarily conserved C-terminal region 7 (ECT7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 6 (TAIR:AT3G17330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_175245.1
    • evolutionarily conserved C-terminal region 7 (ECT7); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 6 (TAIR:AT3G17330.1); Has 1014 Blast hits to 1003 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 432; Fungi - 133; Plants - 336; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17769938..17773518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103707.5 → NP_175245.1  evolutionarily conserved C-terminal region 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EHY2, F4HWS5
      Conserved Domains (1) summary
      pfam04146
      Location:321 → 463
      YTH; YT521-B-like domain

    2. NM_001123974.1 → NP_001117446.1  evolutionarily conserved C-terminal region 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117446.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EHY2, F4HWS5
      Conserved Domains (1) summary
      pfam04146
      Location:321 → 463
      YTH; YT521-B-like domain
    Nucleotide Protein
    Heading Accession and Version

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