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    ty2 thioredoxin Y2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840939, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ty2
    Official Full Name
    thioredoxin Y2
    Primary source
    TAIR:AT1G43560
    Locus tag
    AT1G43560
    See related
    Araport:AT1G43560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT1G43565; Aty2; T10P12.4; T10P12_4; thioredoxin Y2
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    Genomic context

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    See ty2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (16397979..16399880, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of thioredoxin y2 in the preservation of leaf methionine sulfoxide reductase capacity and growth under high light. Laugier E, et al. Plant Cell Environ, 2013 Mar. PMID 22943306
    2. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation. Née G, et al. Int J Mol Sci, 2021 Sep 27. PMID 34638735, Free PMC Article
    3. Lon domain-containing protein 1 represses thioredoxin y2 and regulates ROS levels in Arabidopsis chloroplasts. Shin JS, et al. FEBS Lett, 2020 Mar. PMID 31701529
    4. Characterization of plastidial thioredoxins from Arabidopsis belonging to the new y-type. Collin V, et al. Plant Physiol, 2004 Dec. PMID 15531707, Free PMC Article
    5. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
      Title: A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
    2. plays a physiological function in protein repair mechanisms as an electron donor to plastidial methionine sulfoxide reductases in photosynthetic organs
      Title: Involvement of thioredoxin y2 in the preservation of leaf methionine sulfoxide reductase capacity and growth under high light.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_103481.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein-disulfide reductase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of catalytic activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    thioredoxin Y2
    NP_175021.2
    • thioredoxin Y2 (ty2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 23180 Blast hits to 21538 proteins in 3021 species: Archae - 298; Bacteria - 11849; Metazoa - 3466; Fungi - 1262; Plants - 2020; Viruses - 15; Other Eukaryotes - 4270 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16397979..16399880 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103481.4 → NP_175021.2  thioredoxin Y2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175021.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7S9, Q9XIG4
      UniProtKB/TrEMBL
      A0A178WFY2, A0A5S9WJA6, A0A654EFV3
      Conserved Domains (1) summary
      cl00388
      Location:64 → 163
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7S9.1

    Gene LinkOut

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