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    PUM17 pumilio 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840487, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUM17
    Official Full Name
    pumilio 17
    Primary source
    TAIR:AT1G35850
    Locus tag
    AT1G35850
    See related
    Araport:AT1G35850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APUM17; F10O5.3; F10O5_3; pumilio 17
    Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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    Genomic context

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    See PUM17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (13330510..13331506)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene VQ motif-containing protein Neighboring gene pseudo Neighboring gene translocon outer membrane complex 75-I Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pumilio 17
    NP_174820.1
    • pumilio 17 (PUM17); FUNCTIONS IN: RNA binding, binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 2291 Blast hits to 1248 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 530; Plants - 660; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13330510..13331506
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103284.1 → NP_174820.1  pumilio 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174820.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DY52
      Conserved Domains (1) summary
      cl21719
      Location:98 → 297
      Pumilio; Pumilio-family RNA binding domain

    2. NM_001333170.1 → NP_001322916.1  pumilio 17 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WB30, A0A1P8AVF0
    Nucleotide Protein
    Heading Accession and Version

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