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    RING/FYVE/PHD-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839858, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/FYVE/PHD-type zinc finger family protein
    Primary source
    TAIR:AT1G29800
    Locus tag
    AT1G29800
    See related
    Araport:AT1G29800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N18.15; F1N18_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (10432599..10435441)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Transcriptional coactivator/pterin dehydratase Neighboring gene Magnesium transporter CorA-like family protein Neighboring gene Magnesium transporter CorA-like family protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The phosphatidylinositol 3-phosphate effector FYVE3 regulates FYVE2-dependent autophagy in Arabidopsis thaliana. Kim JH, et al. Front Plant Sci, 2023. PMID 37008475, Free PMC Article
    2. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036033.1
    NM_102720.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autolysosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in organelle membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING/FYVE/PHD-type zinc finger family protein
    NP_001031110.1
    • RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G43230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_174273.3
    • RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G43230.1); Has 3851 Blast hits to 3761 proteins in 321 species: Archae - 0; Bacteria - 225; Metazoa - 2022; Fungi - 664; Plants - 368; Viruses - 3; Other Eukaryotes - 569 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10432599..10435441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102720.4 → NP_174273.3  RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174273.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DWH8, Q84WW7
      Conserved Domains (2) summary
      cd11526
      Location:288 → 490
      SYLF_FYVE; The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins
      pfam01363
      Location:180 → 248
      FYVE; FYVE zinc finger

    2. NM_001036033.1 → NP_001031110.1  RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031110.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WM90, F4I346
      Conserved Domains (2) summary
      cd11526
      Location:288 → 490
      SYLF_FYVE; The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins
      pfam01363
      Location:180 → 248
      FYVE; FYVE zinc finger
    Nucleotide Protein
    Heading Accession and Version

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