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    RNA polymerase II degradation factor-like protein (DUF1296) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839812, updated on 18-Sep-2024

    Summary

    Official Full Name
    RNA polymerase II degradation factor-like protein (DUF1296)
    Primary source
    TAIR:AT1G29370
    Locus tag
    AT1G29370
    See related
    Araport:AT1G29370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15D2.28; F15D2_28
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (10277748..10283225, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene cold regulated 314 thylakoid membrane 2 Neighboring gene COLD REGULATED 314 INNER MEMBRANE 1

    General gene information

    NM_102676.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    RNA polymerase II degradation factor-like protein (DUF1296)
    NP_174230.2
    • Kinase-related protein of unknown function (DUF1296); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: Kinase-related protein of unknown function (DUF1296) (TAIR:AT1G29350.1); Has 14234 Blast hits to 8102 proteins in 480 species: Archae - 0; Bacteria - 599; Metazoa - 5712; Fungi - 1715; Plants - 1064; Viruses - 60; Other Eukaryotes - 5084 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10277748..10283225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332847.1NP_001321633.1  RNA polymerase II degradation factor-like protein (DUF1296) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARI3, A0A5S9WAN7
    2. NM_102676.4NP_174230.2  RNA polymerase II degradation factor-like protein (DUF1296) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174230.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAI2, A0A5S9WAN7, Q8VZT4
      Conserved Domains (1) summary
      pfam06972
      Location:1764
      DUF1296; Protein of unknown function (DUF1296)
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