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    Paired amphipathic helix (PAH2) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839614, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Paired amphipathic helix (PAH2) superfamily protein
    Primary source
    TAIR:AT1G27260
    Locus tag
    AT1G27260
    See related
    Araport:AT1G27260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17L21.32
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (9469948..9470967)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Paired amphipathic helix (PAH2) superfamily protein
    NP_174045.1
    • Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 1078 Blast hits to 561 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 392; Fungi - 252; Plants - 385; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9469948..9470967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102487.1 → NP_174045.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174045.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EE60, F4HR62
      Conserved Domains (2) summary
      COG5602
      Location:1 → 154
      Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
      pfam02671
      Location:177 → 213
      PAH; Paired amphipathic helix repeat
    Nucleotide Protein
    Heading Accession and Version

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