U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    NHL domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839000, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    NHL domain-containing protein
    Primary source
    TAIR:AT1G23890
    Locus tag
    AT1G23890
    See related
    Araport:AT1G23890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23E23.6; T23E23_6
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (8438766..8440866, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RS-containing zinc finger protein 21 Neighboring gene trehalose-phosphatase/synthase 9 Neighboring gene NHL domain-containing protein Neighboring gene gamma-adaptin 1 Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_102237.2
    NM_202173.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    NHL domain-containing protein
    NP_564209.1
    • NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat. subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 3260 Blast hits to 1426 proteins in 249 species: Archae - 112; Bacteria - 1411; Metazoa - 144; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 1403 (source: NCBI BLink).
    NP_973902.1
    • NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat. subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8438766..8440866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102237.2 → NP_564209.1  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564209.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W760, Q945M3
      Conserved Domains (2) summary
      cd05819
      Location:103 → 146
      NHL; NHL repeat [structural motif]
      cl18310
      Location:79 → 184
      NHL; NHL repeat unit of beta-propeller proteins

    2. NM_202173.1 → NP_973902.1  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973902.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EHN8, F4I7N5
      Conserved Domains (2) summary
      cd05819
      Location:103 → 146
      NHL; NHL repeat [structural motif]
      cl18310
      Location:79 → 184
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.