U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    transmembrane protein (DUF677) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838607, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    transmembrane protein (DUF677)
    Primary source
    TAIR:AT1G20180
    Locus tag
    AT1G20180
    See related
    Araport:AT1G20180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20H2.5; T20H2_5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (6996176..6997943)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene tRNA-Glu Neighboring gene expansin 11 Neighboring gene PAM domain (PCI/PINT associated module) protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084098.1
    NM_101871.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein (DUF677)
    NP_001077567.1
    • Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1); Has 138 Blast hits to 138 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_173445.2
    • Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1); Has 186 Blast hits to 186 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6996176..6997943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101871.3 → NP_173445.2  transmembrane protein (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173445.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BQ01, Q6DYE5, Q9LNU2
      UniProtKB/TrEMBL
      A0A178W669, A0A5S9VAV4
      Conserved Domains (1) summary
      cl21731
      Location:87 → 385
      DUF677; Protein of unknown function (DUF677)

    2. NM_001084098.1 → NP_001077567.1  transmembrane protein (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077567.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DYE5
      Conserved Domains (1) summary
      cl21731
      Location:87 → 354
      DUF677; Protein of unknown function (DUF677)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DYE5.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.