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    Transcription factor TFIIE, alpha subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838581, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription factor TFIIE, alpha subunit
    Primary source
    TAIR:AT1G03280
    Locus tag
    AT1G03280
    See related
    Araport:AT1G03280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K9.12; F15K9_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (802970..807066)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SNARE associated Golgi protein family Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene ELKS/Rab6-interacting/CAST family protein Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) Neighboring gene debranching enzyme 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331399.1
    NM_001331400.1
    NM_100210.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor TFIIE, alpha subunit
    NP_563681.1
    • Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT4G20340.1); Has 759 Blast hits to 706 proteins in 191 species: Archae - 5; Bacteria - 10; Metazoa - 313; Fungi - 190; Plants - 108; Viruses - 11; Other Eukaryotes - 122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      802970..807066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100210.5 → NP_563681.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563681.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6M9, Q93ZW3
      Conserved Domains (1) summary
      smart00531
      Location:48 → 214
      TFIIE; Transcription initiation factor IIE

    2. NM_001331399.1 → NP_001320448.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6M9, Q93ZW3
      Conserved Domains (1) summary
      smart00531
      Location:48 → 214
      TFIIE; Transcription initiation factor IIE

    3. NM_001331400.1 → NP_001320447.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6M9, Q93ZW3
      Conserved Domains (1) summary
      smart00531
      Location:48 → 214
      TFIIE; Transcription initiation factor IIE
    Nucleotide Protein
    Heading Accession and Version

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