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    RKD1 RWP-RK domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838461, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RKD1
    Official Full Name
    RWP-RK domain-containing protein
    Primary source
    TAIR:AT1G18790
    Locus tag
    AT1G18790
    See related
    Araport:AT1G18790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRKD1; F6A14.11; F6A14_11; RWP-RK domain containing 1; UAS-TAGGED ROOT PATTERNING5; URP5
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    Genomic context

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    See RKD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (6478779..6480043, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene acyl thioesterase-like protein Neighboring gene RING/U-box superfamily protein Neighboring gene NAP1-related protein 2 Neighboring gene phytochrome kinase substrate-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A GAL4-based targeted activation tagging system in Arabidopsis thaliana. Waki T, et al. Plant J, 2013 Feb. PMID 23057675
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RWP-RK domain-containing protein
    NP_173314.1
    • RWP-RK domain-containing protein; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1); Has 558 Blast hits to 554 proteins in 54 species: Archae - 0; Bacteria - 12; Metazoa - 59; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6478779..6480043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101737.2 → NP_173314.1  RWP-RK domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173314.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M9U9
      UniProtKB/TrEMBL
      A0A178WHM2
      Conserved Domains (2) summary
      pfam02042
      Location:127 → 175
      RWP-RK; RWP-RK domain
      cl00315
      Location:174 → 234
      RPS2; Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9U9.1

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