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    BED zinc finger and hAT dimerization domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838437, updated on 18-Sep-2024

    Summary

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    Official Full Name
    BED zinc finger and hAT dimerization domain-containing protein
    Primary source
    TAIR:AT1G18560
    Locus tag
    AT1G18560
    See related
    Araport:AT1G18560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25I16.10; F25I16_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (6385186..6388180)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene EF hand calcium-binding protein family Neighboring gene Ribosomal protein L6 family protein Neighboring gene ATP binding microtubule motor family protein Neighboring gene myb domain protein 51 Neighboring gene galacturonosyltransferase 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332349.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BED zinc finger and hAT dimerization domain-containing protein
    NP_001319034.1
    • BED zinc finger; hAT family dimerisation domain; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger; hAT family dimerisation domain (TAIR:AT3G42170.1); Has 1077 Blast hits to 1005 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 242; Fungi - 210; Plants - 602; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6385186..6388180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332349.1 → NP_001319034.1  BED zinc finger and hAT dimerization domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W351, A0A5S9V0D0, A0A654ECI5, F4ICA1
      Conserved Domains (3) summary
      smart00614
      Location:56 → 99
      ZnF_BED; BED zinc finger
      pfam05699
      Location:569 → 649
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14372
      Location:429 → 515
      DUF4413; Domain of unknown function (DUF4413)
    Nucleotide Protein
    Heading Accession and Version

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