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    Phosphoinositide phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838305, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Phosphoinositide phosphatase family protein
    Primary source
    TAIR:AT1G17340
    Locus tag
    AT1G17340
    See related
    Araport:AT1G17340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28G4.21; F28G4_21; SAC5; suppressor of actin 5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (5933780..5938817)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor family protein Neighboring gene Metal-dependent phosphohydrolase Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene NADH:ubiquinone oxidoreductase intermediate-associated protein 30

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SAC phosphoinositide phosphatases at the tonoplast mediate vacuolar function in Arabidopsis. Nováková P, et al. Proc Natl Acad Sci U S A, 2014 Feb 18. PMID 24550313, Free PMC Article
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101595.6

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Phosphoinositide phosphatase family protein
    NP_173177.2
    • Phosphoinositide phosphatase family protein; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 1726 Blast hits to 1665 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 579; Plants - 272; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5933780..5938817
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101595.6 → NP_173177.2  Phosphoinositide phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173177.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMR5, Q8RW97, Q9LQI5
      UniProtKB/TrEMBL
      A0A5S9UWA0, A0A654ECL6, A0A7G2DXF6
      Conserved Domains (1) summary
      pfam02383
      Location:94 → 394
      Syja_N; SacI homology domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RW97.1

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