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    LSH8 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838262, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LSH8
    Official Full Name
    LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
    Primary source
    TAIR:AT1G16910
    Locus tag
    AT1G16910
    See related
    Araport:AT1G16910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17F16.11; LIGHT SENSITIVE HYPOCOTYLS 8
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    Genomic context

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    See LSH8 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (5785003..5785959)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Alg9-like mannosyltransferase family Neighboring gene Curculin-like (mannose-binding) lectin family protein Neighboring gene uncharacterized protein Neighboring gene RAB GTPase homolog A1B Neighboring gene F-box/RNI-like/FBD-like domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101552.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in post-embryonic plant morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
    NP_173135.1
    • LIGHT SENSITIVE HYPOCOTYLS 8 (LSH8); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G78815.1); Has 310 Blast hits to 310 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 296; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5785003..5785959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101552.3 → NP_173135.1  LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173135.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZ51
      UniProtKB/TrEMBL
      A0A178W4J0, A0A5S9US37, A0A654ELA7
      Conserved Domains (1) summary
      pfam04852
      Location:11 → 135
      DUF640; Protein of unknown function (DUF640)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZ51.1

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