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    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838027, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
    Primary source
    TAIR:AT1G14650
    Locus tag
    AT1G14650
    See related
    Araport:AT1G14650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5E21.13; T5E21_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5027316..5031883)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Neighboring gene uncharacterized protein Neighboring gene Na+/H+ exchanger 8 Neighboring gene ncRNA Neighboring gene Endomembrane protein 70 protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001123817.1
    NM_001332131.1
    NM_101332.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of U2-type spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
    NP_001117289.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001319005.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39; Bacteria - 4240; Metazoa - 16399; Fungi - 5145; Plants - 6055; Viruses - 891; Other Eukaryotes - 4459 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5027316..5031883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332131.1 → NP_001319005.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWB5, Q8RXF1, Q9MA20
      UniProtKB/TrEMBL
      A0A178W732, A0A5S9UH17, A0A654E9W6
      Conserved Domains (4) summary
      smart00648
      Location:69 → 121
      SWAP; Suppressor-of-White-APricot splicing regulator
      cd01800
      Location:702 → 778
      Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
      pfam09770
      Location:540 → 643
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12230
      Location:262 → 470
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein

    2. NM_101332.4 → NP_172917.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172917.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWB5, Q8RXF1, Q9MA20
      UniProtKB/TrEMBL
      A0A178W732, A0A5S9UH17, A0A654E9W6
      Conserved Domains (4) summary
      smart00648
      Location:69 → 121
      SWAP; Suppressor-of-White-APricot splicing regulator
      cd01800
      Location:702 → 778
      Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
      pfam09770
      Location:540 → 643
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12230
      Location:262 → 470
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein

    3. NM_001123817.1 → NP_001117289.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117289.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWB5, Q8RXF1, Q9MA20
      UniProtKB/TrEMBL
      A0A178W732, A0A5S9UH17, A0A654E9W6
      Conserved Domains (4) summary
      smart00648
      Location:69 → 121
      SWAP; Suppressor-of-White-APricot splicing regulator
      cd01800
      Location:702 → 778
      Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
      pfam09770
      Location:540 → 643
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12230
      Location:262 → 470
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXF1.2

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