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    eukaryotic translation initiation factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837691, updated on 18-Sep-2024

    Summary

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    Official Full Name
    eukaryotic translation initiation factor-like protein
    Primary source
    TAIR:AT1G11480
    Locus tag
    AT1G11480
    See related
    Araport:AT1G11480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23J18.15; T23J18_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (3864043..3867000, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene RNA polymerases N / 8 kDa subunit Neighboring gene miscRNA Neighboring gene zinc finger (C2H2 type) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084046.1
    NM_101021.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor-like protein
    NP_001077515.1
    • eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 398 Blast hits to 374 proteins in 109 species: Archae - 0; Bacteria - 21; Metazoa - 180; Fungi - 52; Plants - 82; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
    NP_563891.1
    • eukaryotic translation initiation factor-related; Has 394 Blast hits to 370 proteins in 111 species: Archae - 0; Bacteria - 23; Metazoa - 177; Fungi - 53; Plants - 82; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3864043..3867000 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101021.4 → NP_563891.1  eukaryotic translation initiation factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563891.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WA04, A0A7G2DTP1, Q94C21
      Conserved Domains (1) summary
      pfam06273
      Location:366 → 424
      eIF-4B; Plant specific eukaryotic initiation factor 4B

    2. NM_001084046.1 → NP_001077515.1  eukaryotic translation initiation factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077515.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DTP1, A8MR62
      Conserved Domains (1) summary
      pfam06273
      Location:351 → 411
      eIF-4B; Plant specific eukaryotic initiation factor 4B
    Nucleotide Protein
    Heading Accession and Version

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