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    Clathrin adaptor complexes medium subunit family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837616, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Clathrin adaptor complexes medium subunit family protein
    Primary source
    TAIR:AT1G10730
    Locus tag
    AT1G10730
    See related
    Araport:AT1G10730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    adaptor protein-1 mu-adaptin 1; AP1M1; T16B5.13; T16B5_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (3565257..3568106)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene EMBRYO SURROUNDING FACTOR-like protein Neighboring gene BSD domain-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene maternally expressed family protein Neighboring gene maternally expressed family protein Neighboring gene carboxyl-terminal peptidase, putative (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis μ-adaptin subunit AP1M of adaptor protein complex 1 mediates late secretory and vacuolar traffic and is required for growth. Park M, et al. Proc Natl Acad Sci U S A, 2013 Jun 18. PMID 23733933, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Coimmunoprecipitation revealed that muB1 (At1g10730) is complexed with the large subunit gamma-adaptin of AP-1.
      Title: Arabidopsis μ-adaptin subunit AP1M of adaptor protein complex 1 mediates late secretory and vacuolar traffic and is required for growth.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100949.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Clathrin adaptor complexes medium subunit family protein
    NP_172543.1
    • Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 2200 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 504; Plants - 215; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3565257..3568106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100949.2 → NP_172543.1  Clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172543.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SAC9, Q9SGX7
      UniProtKB/TrEMBL
      A0A178WI53, A0A5S9TQV3, A0A654E9K9
      Conserved Domains (2) summary
      cd09250
      Location:156 → 426
      AP-1_Mu1_Cterm; C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1
      cd14835
      Location:6 → 145
      AP1_Mu_N; AP-1 complex subunit mu N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SAC9.1

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