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    Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837039, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
    Primary source
    TAIR:AT1G05380
    Locus tag
    AT1G05380
    See related
    Araport:AT1G05380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25N20.3; T25N20_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (1576822..1582672)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vacuole membrane-like protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene tRNA-Asn Neighboring gene photosystem II 11 kDa protein-like protein Neighboring gene uncharacterized protein Neighboring gene CDPK adapter, putative (DUF1423)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. dMi-2, a hunchback-interacting protein that functions in polycomb repression. Kehle J, et al. Science, 1998 Dec 4. PMID 9836641
    2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    3. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001123761.2
    NM_001331546.1
    NM_100417.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
    NP_001117233.1
    • Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_563736.3
    • Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1); Has 4682 Blast hits to 3960 proteins in 222 species: Archae - 3; Bacteria - 7; Metazoa - 2969; Fungi - 456; Plants - 787; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1576822..1582672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001123761.2 → NP_001117233.1  Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117233.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBE1, Q9ZW00
      Conserved Domains (4) summary
      cd04301
      Location:821 → 880
      NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
      smart00249
      Location:668 → 724
      PHD; PHD zinc finger
      cd15532
      Location:628 → 667
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam16135
      Location:513 → 587
      Jas; TPL-binding domain in jasmonate signalling

    2. NM_001331546.1 → NP_001322107.1  Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBE1, Q9ZW00

    3. NM_100417.5 → NP_563736.3  Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563736.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBE1, Q9ZW00
      Conserved Domains (4) summary
      cd04301
      Location:821 → 880
      NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
      smart00249
      Location:668 → 724
      PHD; PHD zinc finger
      cd15532
      Location:628 → 667
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam16135
      Location:513 → 587
      Jas; TPL-binding domain in jasmonate signalling
    Nucleotide Protein
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