AGL31 AGAMOUS-like 31 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: AGL31
Official Full Name: AGAMOUS-like 31
Primary source: TAIR:AT5G65050
Locus tag: AT5G65050
See related: Araport:AT5G65050
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AGAMOUS-like 31; MADS AFFECTING FLOWERING 2; MAF2; MXK3.30; MXK3_30
Summary: Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.
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Genomic context

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See AGL31 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 7

Sequence:: Chromosome: 5; NC_003076.8 (25982254..25986435)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

FLM and MAF2 repress flowering in parallel at low temperature. [MAF2]
Title: MAF2 Is Regulated by Temperature-Dependent Splicing and Represses Flowering at Low Temperatures in Parallel with FLM.
molecular basis of MAF2 gene function and role of alternative MAF2 transcripts in flowering time modulation
Title: Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana.
Association studies support a correlation between the described MAF2-MAF3 gene rearrangements and flowering time variation in the species
Title: Complex rearrangements lead to novel chimeric gene fusion polymorphisms at the Arabidopsis thaliana MAF2-5 flowering time gene cluster.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001085329.1

Supported by ESTs:

NM_001126026.2

Supported by ESTs:

NM_001345661.1

Supported by ESTs:

NM_001345662.1

Supported by ESTs:

NM_125904.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables DNA-binding transcription factor activity	TAS Traceable Author Statement more info	PubMed
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within negative regulation of flower development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within negative regulation of vernalization response	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within vernalization response	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	HDA more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: AGAMOUS-like 31

NP_001078798.1

AGAMOUS-like 31 (AGL31); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1); Has 6764 Blast hits to 6759 proteins in 854 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 300; Plants - 5766; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NP_001119498.1

AGAMOUS-like 31 (AGL31); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_569005.2

AGAMOUS-like 31 (AGL31); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: negative regulation of vernalization response, negative regulation of flower development, regulation of transcription, DNA-dependent, vernalization response, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1); Has 6438 Blast hits to 6434 proteins in 775 species: Archae - 0; Bacteria - 2; Metazoa - 623; Fungi - 300; Plants - 5440; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

25982254..25986435

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001126026.2 → NP_001119498.1 AGAMOUS-like 31 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001119498.1

Status: REVIEWED

UniProtKB/Swiss-Prot

C0J8M2, Q84NB5, Q9FGD9, Q9FPN7

UniProtKB/TrEMBL

A0A178UKR6, A0A5S9YHV5, A0A654GE61

Conserved Domains (2) summary

cd00265
Location:2 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:95 → 164

K-box; K-box region
NM_001345662.1 → NP_001332140.1 AGAMOUS-like 31 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BFZ7, A0A654GE61
NM_001345661.1 → NP_001332141.1 AGAMOUS-like 31 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BG03
NM_125904.3 → NP_569005.2 AGAMOUS-like 31 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_569005.2

Status: REVIEWED

UniProtKB/TrEMBL

A8MRI3, C0J8J3, C0J8L4, C0J8L8

Conserved Domains (2) summary

cd00265
Location:2 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:95 → 148

K-box; K-box region
NM_001085329.1 → NP_001078798.1 AGAMOUS-like 31 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078798.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2FJW9

Conserved Domains (2) summary

cd00265
Location:2 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:95 → 163

K-box; K-box region