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    RNA polymerase II, Rpb4, core protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836415, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase II, Rpb4, core protein
    Primary source
    TAIR:AT5G62950
    Locus tag
    AT5G62950
    See related
    Araport:AT5G62950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQB2.27; MQB2_27
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25262162..25264053, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene ncRNA Neighboring gene UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001085314.1
    NM_001203673.2
    NM_001345569.1
    NM_001345570.1
    NM_001345571.1
    NM_125689.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II, Rpb4, core protein
    NP_001078783.1
    • RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_001190602.1
    • RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1).
    NP_201100.1
    • RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 213 Blast hits to 213 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 38; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25262162..25264053 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345568.1 → NP_001332449.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
      Conserved Domains (1) summary
      smart00657
      Location:4 → 122
      RPOL4c; DNA-directed RNA-polymerase II subunit

    2. NM_001203673.2 → NP_001190602.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190602.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
      Conserved Domains (1) summary
      smart00657
      Location:4 → 122
      RPOL4c; DNA-directed RNA-polymerase II subunit

    3. NM_001345570.1 → NP_001332451.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6I2, A0A1P8BGY7
      Conserved Domains (1) summary
      cl00638
      Location:4 → 93
      RNA_pol_Rpb4; RNA polymerase Rpb4

    4. NM_001345569.1 → NP_001332450.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6I2, A0A1P8BGY7
      Conserved Domains (1) summary
      cl00638
      Location:4 → 93
      RNA_pol_Rpb4; RNA polymerase Rpb4

    5. NM_001345571.1 → NP_001332448.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
      Conserved Domains (1) summary
      smart00657
      Location:4 → 122
      RPOL4c; DNA-directed RNA-polymerase II subunit

    6. NM_125689.5 → NP_201100.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201100.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
      Conserved Domains (1) summary
      smart00657
      Location:4 → 122
      RPOL4c; DNA-directed RNA-polymerase II subunit

    7. NM_001085314.1 → NP_001078783.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078783.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6I2, A8MS47
      Conserved Domains (1) summary
      cl00638
      Location:4 → 99
      RNA_pol_Rpb4; RNA polymerase Rpb4
    Nucleotide Protein
    Heading Accession and Version

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