U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LAC16 laccase 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836008, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LAC16
    Official Full Name
    laccase 16
    Primary source
    TAIR:AT5G58910
    Locus tag
    AT5G58910
    See related
    Araport:AT5G58910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K19M22.11; K19M22_11; laccase 16
    Summary
    putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LAC16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (23789363..23792382, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 82 Neighboring gene Homeodomain-like transcriptional regulator Neighboring gene homeobox prospero protein Neighboring gene hypothetical protein (DUF740)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    laccase 16
    NP_200699.1
    • laccase 16 (LAC16); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Laccase (InterPro:IPR017761), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23789363..23792382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345328.1 → NP_001330402.1  laccase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDN3, A0A1P8BAQ4, A0A5S9YFU4, A0A654GCK4, A0A7G2FL99
      Conserved Domains (1) summary
      TIGR03389
      Location:28 → 567
      laccase; plant

    2. NM_001345329.1 → NP_001330401.1  laccase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFQ5, F4KGE3, Q1PDH6, Q3E893
      UniProtKB/TrEMBL
      A0A178UDN3, A0A5S9YFU4, A0A654GCK4
      Conserved Domains (4) summary
      cd13849
      Location:32 → 147
      CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
      cd13875
      Location:163 → 309
      CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
      cd13897
      Location:410 → 549
      CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
      TIGR03389
      Location:28 → 566
      laccase; laccase, plant

    3. NM_125281.1 → NP_200699.1  laccase 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200699.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDN3, A0A5S9YFU4, A0A654GCK4
      Conserved Domains (4) summary
      cd13849
      Location:1 → 104
      CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
      cd13875
      Location:120 → 266
      CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
      cd13897
      Location:367 → 506
      CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
      TIGR03389
      Location:1 → 523
      laccase; laccase, plant
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PDH6.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.