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    ET2 effector of transcription2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835780, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ET2
    Official Full Name
    effector of transcription2
    Primary source
    TAIR:AT5G56780
    Locus tag
    AT5G56780
    See related
    Araport:AT5G56780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2; ATET2; effector of transcription2; MIK19.25; MIK19_25
    Summary
    Encodes a transcriptional regulator that is required for the induction of dormancy during late seed development.
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    Genomic context

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    See ET2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22964233..22966398, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene serine acetyltransferase 1;1 Neighboring gene transcription repressor-like protein Neighboring gene Protein kinase superfamily protein Neighboring gene metallothionein 1B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. Tedeschi F, et al. New Phytol, 2019 Jan. PMID 30252137, Free PMC Article
    2. Transcriptional regulator AtET2 is required for the induction of dormancy during late seed development. Ivanov R, et al. J Plant Physiol, 2012 Mar 15. PMID 22226340
    3. EFFECTOR OF TRANSCRIPTION2 is involved in xylem differentiation and includes a functional DNA single strand cutting domain. Ivanov R, et al. Dev Biol, 2008 Jan 1. PMID 17991462
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ET2 expression role in DNA methylation in A. thaliana.
      Title: EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis.
    2. A mutation analysis showed that AtET2 (At5g56780) affects the expression of various KNAT genes involved in the maintenance of the undifferentiated state of cambial meristem cells and plays a role in the regulation of GA5 and the cell-cycle-related GASA4.
      Title: EFFECTOR OF TRANSCRIPTION2 is involved in xylem differentiation and includes a functional DNA single strand cutting domain.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125061.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables supercoiled DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed dormancy process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xylem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    effector of transcription2
    NP_200489.2
    • effector of transcription2 (ET2); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26170.1); Has 86 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22964233..22966398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125061.4 → NP_200489.2  effector of transcription2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200489.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K933, Q9FJT5
      UniProtKB/TrEMBL
      A0A178URY3, A0A178UU16, A0A5S9YEP5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K933.1

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