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    Translation initiation factor SUI1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835585, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation initiation factor SUI1 family protein
    Primary source
    TAIR:AT5G54940
    Locus tag
    AT5G54940
    See related
    Araport:AT5G54940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBG8.21; MBG8_21
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22307982..22309453, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene polyadenylate-binding protein interacting protein Neighboring gene AT hook motif-containing protein Neighboring gene Aconitase family protein Neighboring gene pyruvate decarboxylase-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345103.1
    NM_124876.5
    NM_180861.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    Component Evidence Code Pubs
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Translation initiation factor SUI1 family protein
    NP_568818.1
    • Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851192.1
    • Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1); Has 874 Blast hits to 871 proteins in 283 species: Archae - 36; Bacteria - 5; Metazoa - 362; Fungi - 162; Plants - 195; Viruses - 5; Other Eukaryotes - 109 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22307982..22309453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124876.5 → NP_568818.1  Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568818.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USW9, A0A384LMK5, Q9FFT6
      Conserved Domains (1) summary
      cl00229
      Location:5 → 112
      eIF1_SUI1_like; Eukaryotic initiation factor 1 and related proteins

    2. NM_001345103.1 → NP_001332503.1  Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USW9, A0A384LMK5, Q9FFT6
      Conserved Domains (1) summary
      cl00229
      Location:5 → 112
      eIF1_SUI1_like; Eukaryotic initiation factor 1 and related proteins

    3. NM_180861.2 → NP_851192.1  Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851192.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USW9, A0A384LMK5, Q9FFT6
      Conserved Domains (1) summary
      cl00229
      Location:5 → 112
      eIF1_SUI1_like; Eukaryotic initiation factor 1 and related proteins
    Nucleotide Protein
    Heading Accession and Version

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