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    SPL13B Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835138, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SPL13B
    Official Full Name
    Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
    Primary source
    TAIR:AT5G50670
    Locus tag
    AT5G50670
    See related
    Araport:AT5G50670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFB16.6; SPL13; SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13; SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B
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    Genomic context

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    See SPL13B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (20615565..20618063, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene uncharacterized protein Neighboring gene SUMO activating enzyme 1B Neighboring gene hydroxysteroid dehydrogenase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Verticillium dahliae Secretes Small RNA to Target Host MIR157d and Retard Plant Floral Transition During Infection. Zhang BS, et al. Front Plant Sci, 2022. PMID 35519822, Free PMC Article
    2. miR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis. Xing S, et al. Plant Cell, 2010 Dec. PMID 21177480, Free PMC Article
    3. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124445.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in vegetative to reproductive phase transition of meristem IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
    NP_568740.1
    • Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT5G50570.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20615565..20618063 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344905.1 → NP_001332253.1  Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DI20, P0DI11, Q8LFW6, Q9LUF4
      UniProtKB/TrEMBL
      A0A178UFC6, A0A5S9YF45
      Conserved Domains (1) summary
      pfam03110
      Location:101 → 175
      SBP; SBP domain

    2. NM_124445.4 → NP_568740.1  Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568740.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DI20, P0DI11, Q8LFW6, Q9LUF4
      UniProtKB/TrEMBL
      A0A178UFC6, A0A5S9YF45
      Conserved Domains (1) summary
      pfam03110
      Location:101 → 175
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9DI20.1
    P0DI11.1

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