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    CBS/octicosapeptide/phox/Bemp1 domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835133, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CBS/octicosapeptide/phox/Bemp1 domain protein
    Primary source
    TAIR:AT5G50640
    Locus tag
    AT5G50640
    See related
    Araport:AT5G50640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (20605218..20608594, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Molecular chaperone Hsp40/DnaJ family protein Neighboring gene Major facilitator superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_148107.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    CBS/octicosapeptide/phox/Bemp1 domain protein
    NP_680412.1
    • CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT5G50530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20605218..20608594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148107.2 → NP_680412.1  CBS/octicosapeptide/phox/Bemp1 domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680412.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DH79, Q0WLC7, Q8GY40, Q9LUF7
      UniProtKB/TrEMBL
      A0A178UJ06, A0A5S9YDC4, A0A654GAQ6
      Conserved Domains (3) summary
      cd06409
      Location:414 → 498
      PB1_MUG70; The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell ...
      cd17781
      Location:70 → 184
      CBS_pair_MUG70_1; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat1
      cd17782
      Location:237 → 353
      CBS_pair_MUG70_2; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DH79.1
    Q0WLC7.2

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