U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RHA1 winged-helix DNA-binding transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834610, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RHA1
    Official Full Name
    winged-helix DNA-binding transcription factor family protein
    Primary source
    TAIR:AT5G45710
    Locus tag
    AT5G45710
    See related
    Araport:AT5G45710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT-HSFA4C; HEAT SHOCK TRANSCRIPTION FACTOR A4C; HEAT SHOCK TRANSCRIPTION FACTOR A4C; HSFA4C; MRA19.11; MRA19_11; ROOT HANDEDNESS 1
    Summary
    member of Heat Stress Transcription Factor (Hsf) family
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RHA1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (18540665..18542864)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase (DUF1264) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene AAA-type ATPase family protein Neighboring gene tRNA-Glu Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new mutant of Arabidopsis disturbed in its roots, right-handed slanting, and gravitropism defines a gene that encodes a heat-shock factor. Fortunati A, et al. J Exp Bot, 2008. PMID 18381353
    2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001344637.1
    NM_001344638.1
    NM_123938.4
    NM_203162.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within fruit morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    winged-helix DNA-binding transcription factor family protein
    NP_199383.1
    • ROOT HANDEDNESS 1 (RHA1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A4A (TAIR:AT4G18880.1); Has 2389 Blast hits to 2362 proteins in 250 species: Archae - 2; Bacteria - 12; Metazoa - 420; Fungi - 490; Plants - 857; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).
    NP_974891.1
    • ROOT HANDEDNESS 1 (RHA1); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A4A (TAIR:AT4G18880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18540665..18542864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123938.4 → NP_199383.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199383.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FK72
      UniProtKB/TrEMBL
      A0A178UPK9, A0A5S9YBV1
      Conserved Domains (2) summary
      smart00415
      Location:10 → 103
      HSF; heat shock factor
      pfam05149
      Location:107 → 239
      Flagellar_rod; Paraflagellar rod protein

    2. NM_203162.2 → NP_974891.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974891.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3E8G3
      Conserved Domains (1) summary
      pfam06785
      Location:14 → 82
      UPF0242; Uncharacterized protein family (UPF0242)

    3. NM_001344637.1 → NP_001331800.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FK72
      UniProtKB/TrEMBL
      A0A178UPK9, A0A5S9YBV1
      Conserved Domains (2) summary
      smart00415
      Location:10 → 103
      HSF; heat shock factor
      pfam05149
      Location:107 → 239
      Flagellar_rod; Paraflagellar rod protein

    4. NM_001344638.1 → NP_001331801.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3E8G3
      Conserved Domains (1) summary
      pfam06785
      Location:14 → 82
      UPF0242; Uncharacterized protein family (UPF0242)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK72.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools