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    DNA-directed RNA polymerase subunit beta (DUF616) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834275, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-directed RNA polymerase subunit beta (DUF616)
    Primary source
    TAIR:AT5G42660
    Locus tag
    AT5G42660
    See related
    Araport:AT5G42660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJB21.3; MJB21_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (17102924..17106103, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene allene oxide synthase Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene Agenet domain-containing protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_123630.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase subunit beta (DUF616)
    NP_568609.2
    • Protein of unknown function (DUF616); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT2G02910.1); Has 345 Blast hits to 345 proteins in 43 species: Archae - 14; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17102924..17106103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123630.5 → NP_568609.2  DNA-directed RNA polymerase subunit beta (DUF616) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568609.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7W2, Q93Z91
      Conserved Domains (1) summary
      pfam04765
      Location:160 → 453
      DUF616; Protein of unknown function (DUF616)
    Nucleotide Protein
    Heading Accession and Version

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