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    Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834227, updated on 18-Sep-2024

    Summary

    Official Full Name
    Ubiquitin-like superfamily protein
    Primary source
    TAIR:AT5G42220
    Locus tag
    AT5G42220
    See related
    Araport:AT5G42220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K5J14.2; K5J14_2
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    19
    Sequence:
    Chromosome: 5; NC_003076.8 (16872044..16878383)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Major facilitator superfamily protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene serine carboxypeptidase-like 41

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_003076.8

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001344439.1
    NM_123587.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Ubiquitin-like superfamily protein
    NP_199037.2
    • Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 12270 Blast hits to 6672 proteins in 779 species: Archae - 2; Bacteria - 272; Metazoa - 5255; Fungi - 1469; Plants - 2655; Viruses - 175; Other Eukaryotes - 2442 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16872044..16878383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123587.5NP_199037.2  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199037.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAN0, A0A654G776, A0A7G2FG29, Q8L745
      Conserved Domains (1) summary
      pfam00240
      Location:2797
      ubiquitin; Ubiquitin family
    2. NM_001344439.1NP_001330299.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAN0, A0A654G776, A0A7G2FG29, Q8L745
      Conserved Domains (1) summary
      pfam00240
      Location:2797
      ubiquitin; Ubiquitin family