U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CLPS5 CLP1-similar protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833990, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CLPS5
    Official Full Name
    CLP1-similar protein 5
    Primary source
    TAIR:AT5G39930
    Locus tag
    AT5G39930
    See related
    Araport:AT5G39930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLP1-similar protein 5; MYH19.90; MYH19_90
    Summary
    Encodes a protein with similarity to the CLP1 polyadenylation factor.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CLPS5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (15985025..15987339, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene pre-mRNA cleavage complex II protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene thioredoxin 2 Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. Hunt AG, et al. BMC Genomics, 2008 May 14. PMID 18479511, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_123356.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CLP1-similar protein 5
    NP_198809.2
    • CLP1-similar protein 5 (CLPS5); CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 693 Blast hits to 689 proteins in 274 species: Archae - 99; Bacteria - 14; Metazoa - 196; Fungi - 200; Plants - 63; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15985025..15987339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123356.3 → NP_198809.2  CLP1-similar protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198809.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLE2
      UniProtKB/TrEMBL
      A0A654G6J3, A0A7G2FFF6
      Conserved Domains (2) summary
      COG5623
      Location:6 → 421
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 310
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FLE2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools