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    GATA12 GATA transcription factor 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832652, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GATA12
    Official Full Name
    GATA transcription factor 12
    Primary source
    TAIR:AT5G25830
    Locus tag
    AT5G25830
    See related
    Araport:AT5G25830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18A17.80; F18A17_80; GATA transcription factor 12
    Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
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    Genomic context

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    See GATA12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (9004236..9005941, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Exostosin family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DUF1677 family protein (DUF1677)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Ravindran P, et al. Mol Plant, 2017 Oct 9. PMID 28917589
    2. Multiple classes of transcription factors regulate the expression of VASCULAR-RELATED NAC-DOMAIN7, a master switch of xylem vessel differentiation. Endo H, et al. Plant Cell Physiol, 2015 Feb. PMID 25265867
    3. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
    4. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. de Lucas M, et al. Plant Cell, 2016 Oct. PMID 27650334, Free PMC Article
    5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RGL2-containing protein complex can bind the promoter of GATA12 and thereby regulate its expression
      Title: A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Submit: New GeneRIF Correction

    General gene information

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    NM_122484.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in tracheary element differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA transcription factor 12
    NP_197955.1
    • GATA transcription factor 12 (GATA12); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 9 (TAIR:AT4G32890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9004236..9005941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122484.3 → NP_197955.1  GATA transcription factor 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197955.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SVQ5, P69781
      UniProtKB/TrEMBL
      A0A178UTT9
      Conserved Domains (2) summary
      smart00401
      Location:217 → 265
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      pfam00320
      Location:221 → 256
      GATA; GATA zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P69781.1

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