U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    serine-rich protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832600, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    serine-rich protein-like protein
    Primary source
    TAIR:AT5G25280
    Locus tag
    AT5G25280
    See related
    Araport:AT5G25280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18G18.20; F18G18_20
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (8773734..8776594)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SPFH/Band 7/PHB domain-containing membrane-associated protein family Neighboring gene Hyp O-arabinosyltransferase-like protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene ncRNA Neighboring gene F-box protein (DUF295)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The FERONIA-YUELAO module participates in translational control by modulating the abundance of tRNA fragments in Arabidopsis. Zhu S, et al. Dev Cell, 2023 Dec 18. PMID 37977150
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001343916.1
    NM_122437.4
    NM_180741.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables tRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    serine-rich protein-like protein
    NP_197910.1
    • serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G11090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851072.1
    • serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G11090.1); Has 1306 Blast hits to 350 proteins in 64 species: Archae - 0; Bacteria - 8; Metazoa - 365; Fungi - 73; Plants - 167; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8773734..8776594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180741.2 → NP_851072.1  serine-rich protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851072.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3Y3, Q8L8M8, Q93WB2

    2. NM_001343916.1 → NP_001332588.1  serine-rich protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3Y3, Q8L8M8, Q93WB2

    3. NM_122437.4 → NP_197910.1  serine-rich protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197910.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3Y3, Q8L8M8, Q93WB2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools