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    ABC1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832550, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ABC1 family protein
    Primary source
    TAIR:AT5G24810
    Locus tag
    AT5G24810
    See related
    Araport:AT5G24810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6A4.20; F6A4_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    19
    Sequence:
    Chromosome: 5; NC_003076.8 (8516635..8522800, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene vegetative storage protein 1 Neighboring gene transmembrane protein, putative (Protein of unknown function, DUF599) Neighboring gene basic leucine zipper 9 Neighboring gene ncRNA Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203459.1
    NM_122390.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    ABC1 family protein
    NP_001190388.1
    • ABC1 family protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2).
    NP_568458.1
    • ABC1 family protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8516635..8522800 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122390.4 → NP_568458.1  ABC1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568458.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3T7, Q93YN5
      Conserved Domains (3) summary
      COG0661
      Location:44 → 505
      AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
      cd05121
      Location:136 → 390
      ABC1_ADCK3-like; Activator of bc1 complex (ABC1) kinases (also called aarF domain containing kinase 3) and similar proteins
      pfam00144
      Location:527 → 815
      Beta-lactamase; Beta-lactamase

    2. NM_001203459.1 → NP_001190388.1  ABC1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190388.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3T7, F4KIJ2
      Conserved Domains (3) summary
      COG0661
      Location:44 → 536
      AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
      cd05121
      Location:136 → 421
      ABC1_ADCK3-like; Activator of bc1 complex (ABC1) kinases (also called aarF domain containing kinase 3) and similar proteins
      pfam00144
      Location:558 → 846
      Beta-lactamase; Beta-lactamase
    Nucleotide Protein
    Heading Accession and Version

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