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    TRP-like ion channel protein (Protein of unknown function, DUF599) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832531, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TRP-like ion channel protein (Protein of unknown function, DUF599)
    Primary source
    TAIR:AT5G24600
    Locus tag
    AT5G24600
    See related
    Araport:AT5G24600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K18P6.13; K18P6_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (8421558..8423525, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene TCV-interacting protein Neighboring gene ncRNA Neighboring gene cyclic AMP-responsive element-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203455.1
    NM_122368.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRP-like ion channel protein (Protein of unknown function, DUF599)
    NP_001190384.1
    • Protein of unknown function, DUF599; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT3G18215.1).
    NP_197848.1
    • Protein of unknown function, DUF599; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT3G18215.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8421558..8423525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122368.4 → NP_197848.1  TRP-like ion channel protein (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197848.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URV3, Q9FLU4
      Conserved Domains (1) summary
      pfam04654
      Location:10 → 226
      DUF599; Protein of unknown function, DUF599

    2. NM_001203455.1 → NP_001190384.1  TRP-like ion channel protein (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190384.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KH70
      Conserved Domains (1) summary
      pfam04654
      Location:10 → 221
      DUF599; Protein of unknown function, DUF599
    Nucleotide Protein
    Heading Accession and Version

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