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    DUF9 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832443, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DUF9
    Official Full Name
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9)
    Primary source
    TAIR:AT5G23780
    Locus tag
    AT5G23780
    See related
    Araport:AT5G23780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF9; DOMAIN OF UNKNOWN FUNCTION 724 9; MRO11.18; MRO11_18
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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    Genomic context

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    See DUF9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (8017111..8019520, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Remorin family protein Neighboring gene Copper transport protein family Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8) Neighboring gene galactinol synthase 5 Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343824.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9)
    NP_001318630.1
    • DOMAIN OF UNKNOWN FUNCTION 724 9 (DUF9); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 8 (TAIR:AT5G23770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8017111..8019520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343825.1 → NP_001331103.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCT9, A0A5S9Y6T0, A0A654G3K5
      Conserved Domains (3) summary
      pfam05266
      Location:253 → 422
      DUF724; Protein of unknown function (DUF724)
      cd20405
      Location:2 → 71
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
      cd20406
      Location:84 → 148
      Tudor_Agenet_AtDUF_rpt2_4; second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    2. NM_001343824.1 → NP_001318630.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZE64, A0A654G3K5
      Conserved Domains (3) summary
      pfam05266
      Location:267 → 436
      DUF724; Protein of unknown function (DUF724)
      cd20405
      Location:16 → 85
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
      cd20406
      Location:98 → 162
      Tudor_Agenet_AtDUF_rpt2_4; second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
    Nucleotide Protein
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