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    CHY-type/CTCHY-type/RING-type Zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832356, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    Primary source
    TAIR:AT5G22920
    Locus tag
    AT5G22920
    See related
    Araport:AT5G22920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRZPF34; MRN17.15; MRN17_15; RING zinc-finger protein 34; RZPF34
    Summary
    Encodes a protein with sequence similarity to RING, zinc finger proteins. Loss of function mutations show reduced (15%) stomatal aperture under non stress conditions.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (7664871..7667288)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cation/H+ exchanger 3 Neighboring gene cation/H+ exchanger 9 Neighboring gene enabled-like protein (DUF1635) Neighboring gene glucuronoxylan glucuronosyltransferase, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening. Hsu KH, et al. Plant Mol Biol, 2014 Sep. PMID 25002225
    2. Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation. Ding S, et al. Plant Cell, 2015 Nov. PMID 26508764, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CHYR1 is a RING-type ubiquitin E3 ligase that functions positively in ABA and drought responses and its ubiquitin E3 ligase activity is regulated by SnRK2.6-mediated protein phosphorylation.[CHYR1]
      Title: Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation.
    Submit: New GeneRIF Correction

    General gene information

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    NM_122198.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of stomatal opening IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of stomatal opening IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    NP_197683.1
    • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G25560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7664871..7667288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343781.1 → NP_001330321.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJV9, A0A1P8BAG6

    2. NM_122198.3 → NP_197683.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197683.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9Y9, Q9FFB6
      UniProtKB/TrEMBL
      A0A178ULE4, A0A5S9Y7B1, A0A654G3S9
      Conserved Domains (4) summary
      cd00162
      Location:163 → 205
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam05495
      Location:27 → 109
      zf-CHY; CHY zinc finger
      pfam14599
      Location:210 → 268
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:162 → 206
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFB6.1

    Gene LinkOut

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