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    UBQ4 ubiquitin 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832184, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBQ4
    Official Full Name
    ubiquitin 4
    Primary source
    TAIR:AT5G20620
    Locus tag
    AT5G20620
    See related
    Araport:AT5G20620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1M15.20; T1M15_20; ubiquitin 4
    Summary
    encodes a ubiquitin polyprotein.
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    Genomic context

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    See UBQ4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (6973053..6975009, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 5 Neighboring gene ribosomal RNA processing-like protein Neighboring gene EEIG1/EHBP1 protein amino-terminal domain protein Neighboring gene germin 3 Neighboring gene guanine nucleotide-binding protein subunit gamma

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. Callis J, et al. Genetics, 1995 Feb. PMID 7713442, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_122069.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin 4
    NP_568397.1
    • ubiquitin 4 (UBQ4); INVOLVED IN: protein modification process, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6973053..6975009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343676.1 → NP_001332370.1  ubiquitin 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1EC66
      UniProtKB/TrEMBL
      A0A1P8BGQ7, A0A5S9Y1S8, O49976
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    2. NM_122069.4 → NP_568397.1  ubiquitin 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568397.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0CH32
      UniProtKB/TrEMBL
      A0A178UPB8, A0A5S9Y6T3, O49977, Q93ZJ0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CH32.1
    Q1EC66.1

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