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    hypothetical protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831718, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (Protein of unknown function, DUF538)
    Primary source
    TAIR:AT5G01610
    Locus tag
    AT5G01610
    See related
    Araport:AT5G01610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A7.130; F7A7_130
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (230829..232216)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase ATXR3-like protein Neighboring gene ncRNA Neighboring gene ferretin 1 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 35 Neighboring gene BRCA2-like B Neighboring gene prenylated RAB acceptor 1.B5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342600.1
    NM_120239.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (Protein of unknown function, DUF538)
    NP_001318453.1
    • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G08890.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      230829..232216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342600.1 → NP_001318453.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT00, Q84VV4, Q9M015
      UniProtKB/TrEMBL
      A0A178UDF4, A0A5S9Y0S2
      Conserved Domains (1) summary
      pfam04398
      Location:55 → 158
      DUF538; Protein of unknown function, DUF538

    2. NM_120239.3 → NP_195781.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195781.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT00, Q84VV4, Q9M015
      UniProtKB/TrEMBL
      A0A178UDF4, A0A5S9Y0S2
      Conserved Domains (1) summary
      pfam04398
      Location:55 → 158
      DUF538; Protein of unknown function, DUF538
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M015.1

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