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    argininosuccinate lyase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831095, updated on 18-Sep-2024

    Summary

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    Official Full Name
    argininosuccinate lyase
    Primary source
    TAIR:AT5G02580
    Locus tag
    AT5G02580
    See related
    Araport:AT5G02580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22P11.170; T22P11_170
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (579744..580792)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene histone H2A 12 Neighboring gene Histone superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene Heavy metal transport/detoxification superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PSEUDO-ETIOLATION IN LIGHT proteins reduce greening by binding GLK transcription factors. Han Y, et al. Plant Physiol, 2024 Feb 29. PMID 38051979
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001342659.1
    NM_120336.4
    NM_202993.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular sequestering activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of chlorophyll biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of anthocyanin metabolic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    argininosuccinate lyase
    NP_568103.3
    • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1); Has 206 Blast hits to 206 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_974722.1
    • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      579744..580792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120336.4 → NP_568103.3  argininosuccinate lyase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568103.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEX4, Q84TG0, Q8LE39
      Conserved Domains (1) summary
      pfam09713
      Location:17 → 66
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    2. NM_202993.2 → NP_974722.1  argininosuccinate lyase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974722.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KCF8
      Conserved Domains (1) summary
      cl09915
      Location:17 → 49
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    3. NM_001342659.1 → NP_001330265.1  argininosuccinate lyase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA86, Q8LE39
    Nucleotide Protein
    Heading Accession and Version

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