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    HSP17.6II 17.6 kDa class II heat shock protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831075, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HSP17.6II
    Official Full Name
    17.6 kDa class II heat shock protein
    Primary source
    TAIR:AT5G12020
    Locus tag
    AT5G12020
    See related
    Araport:AT5G12020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    17.6 kDa class II heat shock protein; F14F18.190; F14F18_190
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    Genomic context

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    See HSP17.6II in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (3882231..3883111, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene nuclease Neighboring gene heat shock protein 17.6A Neighboring gene Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. At-HSP17.6A, encoding a small heat-shock protein in Arabidopsis, can enhance osmotolerance upon overexpression. Sun W, et al. Plant J, 2001 Sep. PMID 11576425
    2. Class I and II Small Heat Shock Proteins Together with HSP101 Protect Protein Translation Factors during Heat Stress. McLoughlin F, et al. Plant Physiol, 2016 Oct. PMID 27474115, Free PMC Article
    3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121240.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    involved_in response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    17.6 kDa class II heat shock protein
    NP_196763.1
    • 17.6 kDa class II heat shock protein (HSP17.6II); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 17.6A (TAIR:AT5G12030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3882231..3883111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121240.3 → NP_196763.1  17.6 kDa class II heat shock protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196763.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P29830, Q8GWH1
      UniProtKB/TrEMBL
      A0A178UMY5, A0A5S9Y495
      Conserved Domains (1) summary
      pfam00011
      Location:48 → 136
      HSP20; Hsp20/alpha crystallin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P29830.1

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