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    Small GTP-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830766, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Small GTP-binding protein
    Primary source
    TAIR:AT5G08650
    Locus tag
    AT5G08650
    See related
    Araport:AT5G08650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2K12.1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    22
    Sequence:
    Chromosome: 5; NC_003076.8 (2806302..2813602, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DDT domain-containing protein Neighboring gene flavonol synthase 1 Neighboring gene D-lactate dehydrogenase (DUF668) Neighboring gene ATP synthase alpha/beta family protein Neighboring gene ATP synthase alpha/beta family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CpLEPA is critical for chloroplast protein synthesis under suboptimal conditions in Arabidopsis thaliana. Ji DL, et al. PLoS One, 2012. PMID 23166764, Free PMC Article
    2. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The cpLEPA protein appears to be an essential translation factor that promotes the efficiency of chloroplast protein synthesis.
      Title: CpLEPA is critical for chloroplast protein synthesis under suboptimal conditions in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120952.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Small GTP-binding protein
    NP_196482.2
    • Small GTP-binding protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein LepA, C-terminal (InterPro:IPR013842), Protein synthesis factor, GTP-binding (InterPro:IPR000795), GTP-binding protein LepA (InterPro:IPR006297), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Small GTP-binding protein (TAIR:AT5G39900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2806302..2813602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343026.1 → NP_001330039.1  Small GTP-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9J8

    2. NM_120952.6 → NP_196482.2  Small GTP-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196482.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWP3, Q9FNM5
      UniProtKB/TrEMBL
      A0A178USI8, A0A5S9Y3A3
      Conserved Domains (1) summary
      PRK05433
      Location:80 → 679
      PRK05433; GTP-binding protein LepA; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNM5.2

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